Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python …

The Biopython Tutorial and Cookbook contains the bulk of Biopython’s documentation. It provides information to get you started with Biopython, in addition to specific documentation on a …

Oct 28, 2025 · While we generally recommend using pip to install Biopython using the wheel packages we provide on PyPI (as above), there are also Biopython packages for Conda, …

Table of contents Biopython Tutorial & Cookbook Introduction Quick Start – What can you do with Biopython? Sequence objects Sequence annotation objects Sequence Input/Output Sequence …

Biopython Tutorial & Cookbook Named authors: Jeff Chang, Brad Chapman, Iddo Friedberg, Thomas Hamelryck, Michiel de Hoon, Peter Cock, Tiago Antao, Eric Talevich, Bartek …

Most Linux distributions will include an optional Biopython package (although this may be out of date). Otherwise you typically download and uncompress the archive, and install from source.

As mentioned in the introduction, Biopython is a set of libraries to provide the ability to deal with “things” of interest to biologists working on the computer.

Biopython includes the DTDs for most commonly used Entrez Utilities. If validate is True (default), the parser will validate the XML file against the DTD, and raise an error if the XML file contains …

See the Biopython Tutorial sections on sequence alignment and BLAST for explanations of the first few steps shown here. Search for homologs of a protein sequence using BLAST.

This page describes Bio.SeqIO, the standard Sequence Input/Output interface for BioPython 1.43 and later. For implementation details, see the SeqIO development page.